rs262612613 SNP Detail

Summary

• ID
  rs262612613
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141235302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTAGTCC AAAAAAAGCA
  ATATAAACCT AATTGCTGAC TATCACAAAT TCTCATGTGT GTACTTCTTT TTTTCTCCAT
  AACACTCAAA TGGAAAAAAT ACCGTTTCAA TTGAAGCAAT TCATCTTACG CTGACTTATT
  CCTTTATTCA GGACACAGGG TCTCACTATG TAGAACAGGC GAGCCTGCCT CTGCCCCCCC
  M
  CCCCCCCCAC CGTGGGTTGG GACTAAAGGT ATGTGTCACC ACACTCAGCA AGAAACTCTT
  ACATGCCAGG TGTGGTGGCG CACGCCTTTA ATCCCAGCAC TCGGGAGGCA GCAGAGGCAG
  ACAGATTTCT GAGTTCGAGG CCAGGCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TATACAGAGA GACCCTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
ss363522545	MGP_WTSI_4_141063906	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
rs262612613					SNP	A	A	C	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363522545	MGP_WTSI_4_141063906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141235302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			670 bp distal
Rr603782	regulatory region 603782			860 bp distal
Rr603783	regulatory region 603783			587 bp distal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant