rs262597616 SNP Detail

Summary

• ID
  rs262597616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCCTTGG TTTCCGAGAG
  TTGCTCAGCA GTGTTTGTGG CGCGAAGATT CCCACCGCCG ACCCCTGTCA TGATTAAAGG
  AGGCTGGCTG TAGGATTCAA CACGGGAAAG CCAGTCGTGG AAGGGAGAGG GGGCTGTCTC
  GACCACTGGC CTCCGGGTCG ATAGAGAACT TTTCTTTTTT GTCAATTGCC AGGGGCCAAC
  K
  GCGGAGCCTT TGCCCTTCTC GAGAGTTCAT CCTTTGACAT ACATGGACAG CAGGTTGTGT
  GAGAGTAGTT TTATTCATAA GCATGCCGCC AGCATTCATT CAATGACGTT AGAAAAAAAG
  AGAGAAATAA AATAAAATAA AAAGGAGAAA CGGGAAGTAA ACTAGTGTTT GTCATGCTCC
  AAATTCACTT CATGCTAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646622	CHEV_14_60060305	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262597616					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cab39l	calcium binding protein 39-like			Intron
				Noncoding-Transcript-Variant
Cpgi6560	CpG island 6560			137 bp distal
Gm45935	predicted gene, 45935			588 bp upstream
Rr404137	regulatory region 404137			410 bp downstream
Rr493049	regulatory region 493049			604 bp distal
Rr493050	regulatory region 493050			477 bp distal
Rr493051	regulatory region 493051			within coordinates
Setdb2	SET domain, bifurcated 2			588 bp upstream
Tssr125903	transcription start site region 125903			886 bp downstream
Tssr125904	transcription start site region 125904			472 bp downstream
Tssr129008	transcription start site region 129008			581 bp upstream
Tssr129009	transcription start site region 129009			371 bp upstream
Tssr129010	transcription start site region 129010			360 bp upstream
Tssr129011	transcription start site region 129011			161 bp upstream
Tssr129012	transcription start site region 129012			158 bp upstream
Tssr129013	transcription start site region 129013			151 bp upstream