rs262589284 SNP Detail

Summary

• ID
  rs262589284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132570606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACGGCT GCCGCCATCT
  TGCGTCTCCC CCTCCCATTT GGCGGGTCTG AAGCACGCCG GGAAACTAAG AGCTCGGGAG
  GGAAGAGGCG GCATCCCAGC AGCCTGTGCG CAGCGCGTGC GTGCGCACGC GCAACGCAAG
  GACGCTCTCC TGGGAGCGCC TCTGGCGGAG GGCATCAGGG GCTGGGTTTG AAGTCTGCAG
  Y
  GTTTGCTGGA GAGGCTGGGG GCGGGTGTCT CCTTGGTCAC GGGGTCAGGA GTGGTTTGTA
  CCTTGATGCG GCTTTCGCGC TGCGTTTTCC GCCAGAAACC CTAGAGCTCT GCAATCTGCA
  TTAACTCCCA GCTACCCACC CCCTCGGGCT TCATCTAGCG ATAAGCAGGT GATGGCTAGA
  GATAAGAAGT GATGGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336777	CHEV_4_132399210	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262589284					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132570606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	within coordinates
Ppp1r8	protein phosphatase 1, regulatory subunit 8	126 bp upstream
Rr367719	regulatory region 367719	23 bp downstream
Rr367720	regulatory region 367720	within coordinates
Rr601096	regulatory region 601096	183 bp distal
Rr601097	regulatory region 601097	171 bp distal
Rr601098	regulatory region 601098	within coordinates
Rr601099	regulatory region 601099	145 bp proximal
Tssr43718	transcription start site region 43718	350 bp upstream
Tssr43719	transcription start site region 43719	111 bp upstream