rs262558669 SNP Detail

Summary

• ID
  rs262558669
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118225365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGCTCG GAGCGTCAGT
  TCTGGTGGGA GTGCTGCAGG CTGTCCGCTT GGGCTGAGCT GTCCACTGGT CCAGGTGCTG
  AAGTGTGGAG CATTTGGTAT GTAGGGAAAG GGCTGACTCT GTTGCTTGGT TAGGAAGAAA
  ACCTATCGCC TGTCTTGTTC CAGATTTTTT TTCTTAAAGC ATGCTAGTCT GTGGGTCTCT
  S
  TGTGTGTTCT TGTGTGTGTG TGTATGTGTG TGTTCTTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG CGTGTGTGTG ATTTTTCTTG TAATCCTGAT AAACTAAGGG AAAGAACTTG
  GAAAGCATTG AAAAGCTGTG TGGGCATTTA TGCCATGATT CTACAGCATG AGGAGAACGT
  GTGTATGCGA GGTGTGTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359403783	MGP_WTSI_3_118134634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262558669					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359403783	MGP_WTSI_3_118134634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118225365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13749	CpG island 13749	1116 bp distal
Cpgi13750	CpG island 13750	1756 bp proximal
Gm26871	predicted gene, 26871	within coordinates
Rr375642	regulatory region 375642	1329 bp upstream
Rr583893	regulatory region 583893	1304 bp distal
Rr583894	regulatory region 583894	1323 bp distal
Rr583895	regulatory region 583895	237 bp distal
Rr583896	regulatory region 583896	within coordinates
Rr583897	regulatory region 583897	1138 bp proximal
Tssr31405	transcription start site region 31405	1642 bp downstream
Tssr31406	transcription start site region 31406	1348 bp downstream
Tssr31407	transcription start site region 31407	1239 bp downstream
Tssr31408	transcription start site region 31408	251 bp downstream
Tssr31409	transcription start site region 31409	197 bp downstream
Tssr31410	transcription start site region 31410	178 bp downstream