rs262557594 SNP Detail

Summary

• ID
  rs262557594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGTTAG TTCTGTACAC
  ACTCGGGTCT AACAAGTATC TGTTACTTAG GAAAGAGGAG TGGCTAAAAG CCAAGGCGAT
  CGTATTCCAA ATTTGGACCA CATCCCAAAT CTTGTTCAGT GCAAGATGTC AGCAGGTAAG
  GTCATTGCTA CCAAGTCTCA TGATCCGAGT TCCATCCTGG AATCCACATG CTAGGAGAGG
  R
  ATGACTTCTT CAAGTCGTCT TCTGACCACT AGATACTGGC TGTGGAGCAT GCCCTCTCCC
  CATTAAAGAA ATACAATGTA TTAATAATAA TAATGATGAT GATGTCTTGT TCAGGTTCCC
  AAAGAGTCAA GGAAACAGCT AAGTCAGGTT GTTTTGTATC TAGATGTGTG AACTTGTAAC
  TTATTTAAGA TTCTCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928125	CHEV_6_119428290	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262557594					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	596 bp proximal
Fbxl14	F-box and leucine-rich repeat protein 14	1396 bp upstream
Rr637690	regulatory region 637690	34 bp distal
Rr637691	regulatory region 637691	906 bp proximal
Tssr58502	transcription start site region 58502	1208 bp upstream
Tssr58503	transcription start site region 58503	1232 bp upstream
Tssr58504	transcription start site region 58504	1259 bp upstream
Tssr58505	transcription start site region 58505	1473 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron