rs262549932 SNP Detail

Summary

• ID
  rs262549932
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGATCA CTGTGTACCT
  GAGAGAGAAG AAACACAGCC CCTGTGCCTG GGAGGTGGTC AGAGCAGAAG TCTGGAGAGC
  CCTGTCTTCC TCTGCCAATG TGCTGGGAAG ACTGAGAGAA GAGAAATGAG TCCTGAGCCA
  AAGTGTAGAG GACTCTTCCA GACTAGAACA CTGTACCTCT CTGCTCATAT CTCTGTCATC
  T
  CAAAACTGTC ATTCATTTTG GCAGGAATTC AAACAATTTG CCTAAATATT TCTGTAAAGG
  CACTTGTTCT CTTTCAATTC AGTTCTATGT ATACATGTAT GTATGCATGT ATGTATGTAT
  GCTTGTATGT ATTTATTTAT TTATTTATTT GTGTTTATTT ATTCACTTAT TTAACTATCT
  GTGTGATGTA ACATATATTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss362333477	MGP_WTSI_4_88496632	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs262549932					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362333477	MGP_WTSI_4_88496632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768965 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	within coordinates
Ifna1	interferon alpha 1	72 bp downstream
Rr595123	regulatory region 595123	475 bp proximal