rs262460379 SNP Detail

Summary

• ID
  rs262460379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148967709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCCACA CCCAGTTTAT
  GGGGTGCTAG AGATCTAACT GAGGGCCACA TGCGTGCTAA ACAAGCGGTC TGTCGATTTA
  GCTGGGCCAA GGGTGCATTG GAGGGTGGCT CAAACCCTGC CCAGGACAGA GAAGAAGGAG
  GACTCTTTTG AAATTACCAC ATCACCCTCC TACCCCAGCT TGACTCATCT GGTGCCTCTG
  Y
  TGAGTTCCCA TGTCTGACAC CTCCTCTTCT GGGCTCTCAC CTTTTCTCCT GTTGTACTGT
  GAGTTTTATT ATGGTAAATA TACATGCCAT AAAGTTGACC AATGTGACCG CTTTAAGTGC
  ACATTCGGTG GCAATACTCA CAAGTTATAC ATCTACCACC AATATCTAGT TCCAGAATGT
  ATGTGTGTGT GTGTGTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss363625788	MGP_WTSI_4_148257361	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs262460379					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363625788	MGP_WTSI_4_148257361	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148967709 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr604786	regulatory region 604786	1104 bp distal
Rr604787	regulatory region 604787	293 bp distal
Rr604788	regulatory region 604788	1959 bp proximal