rs262457072 SNP Detail

Summary

• ID
  rs262457072
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTCAGT TTTAATGTGT
  TTTAGGTTTT CATTGTCTTC TATCATAATT CTAAATATTT TACATATACT ATTATTTTGT
  TTGTTAGGGT TCTTATTGAC TTCATTAGCT TCATATAATC ATCATATCAA ATTCATACAC
  ATATACACAT ATATACATAC TCATGAACAG AAAAACTCAT CACGTGTCAA TTACTAATTT
  G
  TGAGTATATA AAAACTTTCT TTGACAAAAT ATTTATCCTC TTAATTATAT ACCTTCTTGC
  CATTTTTATG TTTTTGGAAA CATTCTCCTC CTCTGTGTGC AGAAAACTCC AACCAGCAGC
  ATAAAAATGT AAAATAAGAC TTAAAATATA TAGTCACTTT TACTTTGTTT TCACATTACT
  CTGCACTACA ATCCCAGATA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379541	MGP_WTSI_10_51199759	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs262457072					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379541	MGP_WTSI_10_51199759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356049 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	659 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	708 bp upstream
Rr431273	regulatory region 431273	520 bp proximal
Tssr93232	transcription start site region 93232	283 bp upstream
Tssr93233	transcription start site region 93233	860 bp upstream
Tssr93234	transcription start site region 93234	886 bp upstream
Tssr93235	transcription start site region 93235	1179 bp upstream
Tssr93236	transcription start site region 93236	1665 bp upstream
Tssr93237	transcription start site region 93237	1704 bp upstream
Tssr93238	transcription start site region 93238	1728 bp upstream
Tssr93239	transcription start site region 93239	1753 bp upstream
Tssr93240	transcription start site region 93240	1770 bp upstream
Tssr93241	transcription start site region 93241	1792 bp upstream
Tssr93242	transcription start site region 93242	1832 bp upstream
Tssr97553	transcription start site region 97553	481 bp downstream