rs262420889 SNP Detail

Summary

• ID
  rs262420889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCCCGGG TGACAGCGCG
  GCGGCGCCAG TCCCGGGAAG CCAGGTCTGT TCGCGTGTCG CCCGTCGCAC TGTCCAGACC
  CCGCCATGGC TTCGACCACC ACCTGCACCC GGTTCACCGA CGAGTATCAG CTCTTTGAGG
  AGCTCGGAAA GTAAGCGTCC CTGCCTGGCA TCTCCTCCTC CCCACGACCC CTCGTCTCCC
  Y
  CGTGGGGATA GAGAGCCTGC GGGCCGAGGC GGGGAGACGG ACCCTGGCTT GGTGCGGGTG
  GGGCACACAG GGAAGGAAAC CTTTGCCCTA CTGTGGCGGG TGCTCCGAAT TCCCAGCCCA
  TCTTCTCGGG TCCTCCACCT CTCCACGGGG GACTTAGTGA ATTTATGATC TCTGCAGTTG
  TAGCTGTCAT CCTGAGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359614794	MGP_WTSI_3_126300473	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262420889					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359614794	MGP_WTSI_3_126300473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1091 bp downstream
Rr397994	regulatory region 397994			1731 bp upstream
Rr584646	regulatory region 584646			131 bp distal
Rr584647	regulatory region 584647			648 bp distal
Rr584648	regulatory region 584648			536 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1807 bp proximal
Tssr31566	transcription start site region 31566			1212 bp downstream
Tssr31567	transcription start site region 31567			1183 bp downstream
Tssr31568	transcription start site region 31568			1136 bp downstream
Tssr31569	transcription start site region 31569			701 bp downstream
Tssr31570	transcription start site region 31570			569 bp downstream
Tssr31571	transcription start site region 31571			517 bp downstream
Tssr31572	transcription start site region 31572			442 bp downstream
Tssr31573	transcription start site region 31573			301 bp downstream
Tssr31574	transcription start site region 31574			142 bp downstream
Tssr31575	transcription start site region 31575			120 bp downstream