rs262362780 SNP Detail

Summary

• ID
  rs262362780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAAGCA ACTTCATAGT
  TTTCTGAGAG GTCACTCCGA CCTAAGGAAA CAGAACAGCC AGCTAGTTGC TTTCTACATG
  CTGTAATTTG AACATCCGAA AGTGGATGCT TTCGGACATG CTGTAATTTG AAGTTCTTAC
  ATTGATAATT TAAGAAGAAC AGACCACATC ATGGGAGTTT TAGTTTTTTT CAGTTTTAGG
  K
  TTTTTTTTTT CTCACTGAAA TGTATATTCT TATCAGTTAA CTTTCATTTT GATGAAATAT
  GTCAGAGAAG GTCGGAATAC AGGAAACAAT CCAAAACGTT TAAAATATAT ATATAATCGT
  GTAACATTAC TGGCAAGGAG CTTCAGAAAA TATCTTCAGA AGCCCTTCCT ATTAGTGATG
  GGAAATAGGG GACTTCCGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357564846	MGP_WTSI_3_36511159	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262362780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357564846	MGP_WTSI_3_36511159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666386 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	859 bp proximal
Rr575383	regulatory region 575383	384 bp proximal
Rr575384	regulatory region 575384	1038 bp proximal
Rr575385	regulatory region 575385	1191 bp proximal
Tssr28874	transcription start site region 28874	1245 bp upstream
Tssr33039	transcription start site region 33039	1102 bp downstream
Tssr33040	transcription start site region 33040	1133 bp downstream
Tssr33041	transcription start site region 33041	1181 bp downstream
Tssr33042	transcription start site region 33042	1224 bp downstream
Tssr33043	transcription start site region 33043	1252 bp downstream