rs262338678 SNP Detail

Summary

• ID
  rs262338678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80944898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCCAGT GCCCGCCGCG
  AGTGAGCCCT CGCCCCAGTC AGCCAAATGC TCCTCCTCGG CCTCCTCCTG CTGACATCTG
  CCCTGGCCGG CCAAAGAACG GGGACTCGGG CTGAGTCCAA CCTGAGCAGC AAGTTGCAGC
  TCTCCAGCGA CAAGGAACAG AACGGTGAGT ATCGCCCCCT CCTCCCCCTT CCCGCGTCTC
  K
  CTGTGCGTTC GGGTTGGCAT TGTGCGGTGG CATGTGGGGT CCTCCAGTCG TGGAGCTGAT
  GGTCGGGTCT CTGGCGCTGC AGATGGGAGT TTCCTGAGTC CGCGTGCACT TTCTGGGGTG
  GGGGCAGATT TCGGCAGTTT GCAACTTCCG AAGCTCACTG AGTAGAGGGA GCGGGAAGTG
  CCCCGCAACC TCAGAGTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358623195	MGP_WTSI_3_80841513	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262338678					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358623195	MGP_WTSI_3_80841513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80944898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	within coordinates
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	71 bp upstream
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr375235	regulatory region 375235	1925 bp downstream
Rr578682	regulatory region 578682	1165 bp distal
Rr578683	regulatory region 578683	482 bp distal
Rr578684	regulatory region 578684	1131 bp distal
Rr578685	regulatory region 578685	1075 bp distal
Rr578686	regulatory region 578686	623 bp distal
Rr578687	regulatory region 578687	within coordinates
Rr578688	regulatory region 578688	82 bp proximal
Rr578689	regulatory region 578689	1256 bp proximal
Rr578690	regulatory region 578690	1782 bp proximal
Rr578691	regulatory region 578691	1969 bp proximal
Tssr29617	transcription start site region 29617	1220 bp downstream
Tssr29618	transcription start site region 29618	853 bp downstream
Tssr29619	transcription start site region 29619	580 bp downstream
Tssr29620	transcription start site region 29620	515 bp downstream
Tssr29621	transcription start site region 29621	386 bp downstream
Tssr29622	transcription start site region 29622	366 bp downstream
Tssr29623	transcription start site region 29623	200 bp downstream