rs262286530 SNP Detail

Summary

• ID
  rs262286530
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135672241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CTGGTGAGAT GGCTCAGCAA
  A
  TAAGAGTCTG AAGGTCCGGA GTTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353557	CHEV_4_135500845	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262286530					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135672241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	1345 bp proximal
Gm69275	predicted gene, 69275	1109 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	1535 bp upstream
Rr602209	regulatory region 602209	1107 bp distal
Rr602210	regulatory region 602210	1052 bp distal
Rr602211	regulatory region 602211	726 bp proximal
Rr602212	regulatory region 602212	1437 bp proximal
Rr602213	regulatory region 602213	1529 bp proximal
Tssr39660	transcription start site region 39660	1517 bp upstream
Tssr44007	transcription start site region 44007	1435 bp downstream