rs262247671 SNP Detail

Summary

• ID
  rs262247671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115893925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGCTGG GAGGGATCTA
  TGCTTAGGTG TTTCCTGGCC AGGAGCTCTG CCCAGCTAAG GCCTACTGTC ATCCAGGATG
  GACTACTCTT AAGCAGGACA CTTGTCCATC GCTGCCCTCT TGGCCCCTAG CCAAGGAGCA
  GCATAGGAGG AAAAGATATC ACTTGACACA TTTCCCCTCC TTCCCTCCCG TGCTCCTCCC
  R
  CACAGCAGAT CCTGCCCAGA AGGACGCGAT GCTGGACAAG TTTCACCACT TCCAACACCT
  GGCTGAGCTG TACCATGGCT ATCAAACCAT TCACCGATAC ACGGTAGGGT GACAAGGAGA
  CTGGTGTAGC ACCTTCGGTG TCACATGCTC AGCAAGGGCC TCAGAGAGAT GGGGTATGTG
  ATGAGCTGCC CAGAAGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369762846	MGP_WTSI_6_115866982	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262247671					SNP	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369762846	MGP_WTSI_6_115866982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115893925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr637097	regulatory region 637097			1573 bp distal
Tssr58330	transcription start site region 58330			1119 bp downstream