rs262164677 SNP Detail

Summary

• ID
  rs262164677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62442362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCCTAC TCTCTCCATT
  CAGTTGTCTA TTTCCTCCTC TTCGTTCTGG TCGTCCTCGT CCAGTCTCTC TTCATCCTCC
  TCCTCCTCCT CTCTGCTTTT GTCTTGCTCT TCGGAATCCT TTTTGTCTTT GTCCTTCTTC
  TTTTGCTCCG AAGCCTCCTT CTTGCCTTTC TGCTCCCGCC TGTACGCTGT AAGGAAGCAG
  S
  ATATTATGGT TTAATTAGAC AAACCGAGGC ACAGGTGGAA TAACCAGGCC CCTATCACAT
  ACCCGAGATG GTACCAACTA AACAGAGGGG AGTTATGACC AGTCCTGTAT TATTGAACGG
  GACTTAATGG CACTGATACT GATGAGCATT TTTTTTATAT ATGGTTTAAG AGACAGAAGA
  GTACGTGGAT ACCTTCTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361714666	MGP_WTSI_4_62185159	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262164677					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714666	MGP_WTSI_4_62185159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62442362 () rs orientation: forward

Symbol	Name	Function Class
4933430I17Rik	RIKEN cDNA 4933430I17 gene	1244 bp upstream
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	Intron
Rr367636	regulatory region 367636	896 bp upstream
Rr593339	regulatory region 593339	656 bp proximal
Rr593340	regulatory region 593340	933 bp proximal
Rr593341	regulatory region 593341	1255 bp proximal
Tssr37493	transcription start site region 37493	1493 bp upstream
Tssr42018	transcription start site region 42018	271 bp downstream
Tssr42019	transcription start site region 42019	657 bp downstream
Tssr42020	transcription start site region 42020	719 bp downstream
Tssr42021	transcription start site region 42021	911 bp downstream