rs262111387 SNP Detail

Summary

• ID
  rs262111387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGCACG CTCACGTGAC
  GCTAATGACG TCAGCCCCCT CTGGGTCGCG TGACCCACAG CCAACCTTCC TACCGCCCCA
  CCCCCTCGCC ACTGGCGTGG GACATCTCGC GAGAAGCCTT CTTACTATCA GAACTTGCTG
  AGGTTACAGG GGAGTTACTC TGGAGAGGAA GGAAGGTGTG GCAGAGTGGT GCACTTTTGG
  S
  TTTCATTATG TTAGAGTTTA TGATCAAGCA AATGCTTATG GGGATCGCCC TAGTCGGGAA
  AAGGGGAGAG AAGGGCGAAG ACGTGACAGT AAAAACTGAA GCGAAACGTG GTGCCCTGAC
  CATCTTTGCC CCTAGCTAAG GGACAGCCGG GCGCAGCAGA GGTGGCCAAG GCTGGCAGCC
  CCAGGCAGTA GCTGCGAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946576	CHEV_3_126299327	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262111387					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			within coordinates
Rr584646	regulatory region 584646			52 bp proximal
Rr584647	regulatory region 584647			477 bp proximal
Rr584648	regulatory region 584648			589 bp proximal
Rr584649	regulatory region 584649			1016 bp proximal
Tssr31566	transcription start site region 31566			66 bp downstream
Tssr31567	transcription start site region 31567			37 bp downstream
Tssr31568	transcription start site region 31568			within coordinates
Tssr31569	transcription start site region 31569			404 bp upstream
Tssr31570	transcription start site region 31570			552 bp upstream
Tssr31571	transcription start site region 31571			584 bp upstream
Tssr31572	transcription start site region 31572			693 bp upstream
Tssr31573	transcription start site region 31573			829 bp upstream
Tssr31574	transcription start site region 31574			890 bp upstream
Tssr31575	transcription start site region 31575			1006 bp upstream