rs262101840 SNP Detail

Summary

• ID
  rs262101840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151948477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCAATG GTTTGGGTGT
  GTCATGTCTA TTGGGAGGAT CTTGTCCAGT CAGGAAGTAG GCAAGGATAA GGTCAGTCTA
  TCATGGAAGG AGGGTCCCCT CAGTAACTAG GGGTTGGAGT TTGTGTCGAG TTAGGCCAAC
  ATGGCTTCCC ATCCCTTCTT CCAGCTTCTT GAGATTCATA GACCCTATGA CCCCTAAGTC
  Y
  ACAGATGTTT TCGTCCTAAA ATTTGCACCC CTGTCTTCCT GTGTGAACTT CACAAGAGCA
  GGGACTTTGC CATCTTGGCA GTTGCCTTCA AGCTGTGACT GATTTAGCCC AGTATGCTCT
  GTCAGCACCA ATGAGCCTTT GGGCAAACTT TCTCCACCCC AGGAAGTGCT TCCATCCCTC
  TATTGTGGTC ATTGTTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144635	MGP_WTSI_2_151932293	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262101840					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144635	MGP_WTSI_2_151932293	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151948477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			445 bp upstream
Cpgi12438	CpG island 12438			389 bp distal
Rr567287	regulatory region 567287			1112 bp distal
Rr567288	regulatory region 567288			1023 bp distal
Rr567289	regulatory region 567289			1028 bp distal
Rr567290	regulatory region 567290			876 bp distal
Rr567291	regulatory region 567291			19 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20767	transcription start site region 20767			1739 bp downstream
Tssr20768	transcription start site region 20768			1622 bp downstream
Tssr20769	transcription start site region 20769			818 bp downstream
Tssr20770	transcription start site region 20770			295 bp downstream
Tssr20771	transcription start site region 20771			1456 bp upstream
Tssr26780	transcription start site region 26780			1170 bp upstream
Tssr26781	transcription start site region 26781			501 bp upstream