rs262086878 SNP Detail

Summary

• ID
  rs262086878
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72593849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG CTACCGGGCG ACAGCAGCCG
  C
  TGTCTGTGTG TTCCGGTAGA GTGCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321822461	CHEV_6_72566860	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262086878					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72593849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	within coordinates
Gm20536	predicted gene 20536	676 bp downstream
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	within coordinates
Rr632243	regulatory region 632243	1370 bp distal
Rr632244	regulatory region 632244	39 bp distal
Rr632245	regulatory region 632245	109 bp distal
Rr632246	regulatory region 632246	within coordinates
Rr632247	regulatory region 632247	124 bp proximal
Tgoln1	trans-golgi network protein	mRNA-UTR
Tssr57152	transcription start site region 57152	within coordinates
Tssr61478	transcription start site region 61478	110 bp upstream