rs262031575 SNP Detail

Summary

• ID
  rs262031575
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCAGGACC AGCCAGACAA ACTGGCAGTC
  CCTGTAAGCG GTTCCCGGGT CATAGGGTTA GGGCACCCCT GTTTAACTTT GGGGTGGGGA
  AAGTATCTGG TTTTCTTTGA TAAATTGCTT GTGAACCACA TTTGCCAAGT GGCCTCCAGG
  T
  CTCAAACTCA AAGACCGAGC TAAATCGACT CGGAAGGCAA TGCTGAATGA AGATTGTGGG
  AACTGAGATA GATACACTCC TCTATGTTGC AATGTGATTA ATGGTTCTAC TAATTTTATC
  TAAGGGGGCG CAGAGAAGAA AAAGTGGGGA                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321921055	CHEV_6_117125979	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262031575					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152922 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1637 bp distal
Rr637290	regulatory region 637290	1889 bp distal
Rr637291	regulatory region 637291	1838 bp distal
Rr637292	regulatory region 637292	382 bp proximal
Tssr58411	transcription start site region 58411	1983 bp downstream
Tssr58412	transcription start site region 58412	1971 bp downstream
Tssr58413	transcription start site region 58413	1947 bp downstream
Tssr58414	transcription start site region 58414	1925 bp downstream
Tssr58415	transcription start site region 58415	1907 bp downstream
Tssr58416	transcription start site region 58416	1889 bp downstream
Tssr58417	transcription start site region 58417	1835 bp downstream
Tssr58418	transcription start site region 58418	1809 bp downstream
Tssr58419	transcription start site region 58419	1789 bp downstream
Tssr58420	transcription start site region 58420	1754 bp downstream
Tssr58421	transcription start site region 58421	1730 bp downstream
Tssr58422	transcription start site region 58422	1717 bp downstream
Tssr58423	transcription start site region 58423	1696 bp downstream
Tssr58424	transcription start site region 58424	1637 bp downstream
Tssr58425	transcription start site region 58425	1598 bp downstream
Tssr58426	transcription start site region 58426	1580 bp downstream
Tssr58427	transcription start site region 58427	1546 bp downstream
Tssr58428	transcription start site region 58428	1535 bp downstream
Tssr58429	transcription start site region 58429	1457 bp downstream
Tssr58430	transcription start site region 58430	1426 bp downstream
Tssr58431	transcription start site region 58431	1327 bp downstream
Tssr58432	transcription start site region 58432	1246 bp downstream
Tssr58433	transcription start site region 58433	1221 bp downstream
Tssr58434	transcription start site region 58434	774 bp downstream
Tssr62622	transcription start site region 62622	1669 bp upstream
Tssr62623	transcription start site region 62623	1649 bp upstream
Tssr62624	transcription start site region 62624	1503 bp upstream
Tssr62625	transcription start site region 62625	1364 bp upstream
Tssr62626	transcription start site region 62626	1299 bp upstream
Tssr62627	transcription start site region 62627	1254 bp upstream
Tssr62628	transcription start site region 62628	1122 bp upstream
Tssr62629	transcription start site region 62629	942 bp upstream