rs261998863 SNP Detail

Summary

• ID
  rs261998863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106694429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGGGA GAATCCACTC
  AGCCAATCAT TTGTGAACCA CAGTCCACCT TAGTCAGAGT CTCTCCAGCT TCATCTCTCC
  CCTTATACAT CAGCTCACCT TAGTTCCACA TAATTACTCT TTTACTTCCT GGTATGGGAC
  CAATTTCCTT GTCTCCCTCG GGACTCAGCA CGTGTCCCCA GGAAGCCTTT TCTGCCTCAG
  Y
  CTAGGCAAGG GTCCTCTTAG GAACGCATTC TGACTTGGAT TATGGTGATG CACACCTTTA
  ATCCCAGCTC AGGAGGCAGA GCTCTGAGTT CCAAGCCAGC CTGGTCTACA ATATAAGTCC
  CAGGACAAGA TTTACACAGA GAAACCTTGT CTCAAAAAAA AGGGGGGTGG GGAGTGGAAG
  GGAACCCATC TTTCGAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746185	MGP_WTSI_4_106509837	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261998863					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746185	MGP_WTSI_4_106509837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106694429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14533	CpG island 14533	711 bp proximal
Cpgi14534	CpG island 14534	1602 bp proximal
Gm57074	predicted gene, 57074	332 bp upstream
Gm69615	predicted gene, 69615	308 bp downstream
Rr376971	regulatory region 376971	1209 bp upstream
Rr596834	regulatory region 596834	within coordinates
Rr596835	regulatory region 596835	166 bp proximal
Rr596836	regulatory region 596836	343 bp proximal
Rr596837	regulatory region 596837	924 bp proximal
Rr596838	regulatory region 596838	979 bp proximal
Rr596839	regulatory region 596839	1815 bp proximal
Tssr38190	transcription start site region 38190	327 bp downstream