rs261982927 SNP Detail

Summary

• ID
  rs261982927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59261624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATCACA CAGGAAGAAG
  CCTGAGAGCA AGGCACCTGT GTTGAGGCTG CTCCTGCCCA GTTCCCTGTG GGCTCACACA
  CCACAGTACC TAGCAGATCT TAAAGGTTTC CTCCTGCTTT TAGTAAGCAT CTACTTTAGA
  TATAAGAATA ATGGTTTTTT GTTTGTTTGT TTGTTGGGTT TTTTTTTTTT TTTGGTTTTT
  K
  CGAGACAGGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAG CTCACTTTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCC GCCTGCCTCT GCCTCCCGAG TGCTGGGATT AAAGGCGTGC
  GCCACCACGC CCAGCGTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTAATGC
  CAGGCACAGA TAAGGGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361688286	MGP_WTSI_4_59274496	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261982927					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361688286	MGP_WTSI_4_59274496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59261624 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	1705 bp upstream
Gm68878	predicted gene, 68878	within coordinates
Rr367634	regulatory region 367634	77 bp downstream
Rr398285	regulatory region 398285	369 bp downstream
Rr593020	regulatory region 593020	1563 bp distal
Rr593021	regulatory region 593021	1610 bp distal
Rr593022	regulatory region 593022	96 bp distal
Rr593023	regulatory region 593023	598 bp proximal
Rr593024	regulatory region 593024	1999 bp proximal
Tssr37421	transcription start site region 37421	1571 bp downstream
Tssr37422	transcription start site region 37422	1366 bp upstream