rs261966641 SNP Detail

Summary

• ID
  rs261966641
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGA CGGATCTCGG
  ATCTCTCGAA GTTTGAGGCC ATCCAGGTCT GCATAGCAAA CTCCAGGACA GTCAGGATTA
  CACAGAGAAA CCCCCGACTC AAAAGCAAAC AAACAAAAGA GTGAACGCCA CACCAAGATG
  CTACTGGAAG TTACCCTATG CTGCATAGCC TCACGCTAAA TCCAGACGTT TACCTTAAGA
  M
  GTAAAAGCGT TTGCCAGGCG GTGGTGGCGT GGGGGGGGGG GGGGGGGGGC AGAGCCAGGC
  ATAGCTCTAT GAATTCAAGG CCAACCTTCA AAGCGAGTTC CAGGACAGCC AGGGCTACCC
  AGAGAAACCC TATTTGCAAA CAAACAAACA AATAAACAGA AATGCAAAAG ACATAAATAT
  GTTTTAAGGT GTATTTGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361699341	MGP_WTSI_4_59797480	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261966641					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361699341	MGP_WTSI_4_59797480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	500 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	377 bp upstream
Rr398295	regulatory region 398295	525 bp downstream
Rr593135	regulatory region 593135	811 bp distal
Rr593136	regulatory region 593136	252 bp distal
Rr593137	regulatory region 593137	572 bp distal
Rr593138	regulatory region 593138	1855 bp proximal
Tssr41950	transcription start site region 41950	732 bp upstream