rs261960515 SNP Detail

Summary

• ID
  rs261960515
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77647471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCCCGGG GGCGGCGCAG
  CCTGGAAGGC CGCCTGGTCA CCGGGTCCCA CGCGCCCCTC AGCCTCCAGC AGGGGTCGGG
  GGTGGGGGGA TTCCCCAAGG CGGGACGCAA ACCTCGCGCG CGCGGGGGCC GACGTGTCAC
  CTACTGGCCG AGCGGACTAA AACTCTTCTT GGAGATGCTC GCCACCAAGT ATGGGCTCTG
  M
  CCCCGCGTGC AGCTCCCGGC TGGCGGGCGA CACAGATCAG CCTCCGCGGG GACCCAGGGC
  TTCGCAGCCC AGCAAGGACC TGCGAGGCTC GTGCGCAGGG GAGGGGCTCG CCTGCTCCTA
  CTGCCAGACC TCGCTGATTG AAGTTTCAAA AACTAAACCG TGTCAGGGGT TCCCCCGGTG
  TAAGCCATCT TCTGAAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss354554528	MGP_WTSI_2_77655184	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs261960515					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354554528	MGP_WTSI_2_77655184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77647471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	within coordinates
Rr559844	regulatory region 559844	322 bp distal
Rr559845	regulatory region 559845	within coordinates
Rr559846	regulatory region 559846	118 bp distal
Rr559847	regulatory region 559847	49 bp distal
Tssr24865	transcription start site region 24865	499 bp upstream
Tssr24866	transcription start site region 24866	436 bp upstream
Tssr24867	transcription start site region 24867	400 bp upstream
Tssr24868	transcription start site region 24868	379 bp upstream
Tssr24869	transcription start site region 24869	312 bp upstream
Tssr24870	transcription start site region 24870	196 bp upstream
Tssr24871	transcription start site region 24871	298 bp downstream
Tssr24872	transcription start site region 24872	364 bp downstream
Tssr24873	transcription start site region 24873	541 bp downstream
Zfp385b	zinc finger protein 385B	mRNA-UTR