rs261881969 SNP Detail

Summary

• ID
  rs261881969
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTCCTT AGCAAGTTAC
  CTAACCTGAG AAGACAGAGA GAGCTGTGAC TCAAGTCTGA GGAAGGCGAT GAGAGGTTTC
  TGGAAGGAGA TGACATAAAC TTACTCCCTT TGTTTTGATT TTTTTTTTCC CTTGCAGTTA
  GGGATGGTTT GGGCTTTGTC TTTTTGTGGT TTATTTATTT CTATTTGTTC TTTTTGTTTT
  G
  TTGCTCCTGT TGTTGTCCGT ACAGGGATGA AACCCAGATC TTCACTCAAG CAAGGCAAAC
  TGTCTAGCTC ACCGCCACAC TCCCACGCCT AACCAGCTTG AACTTGATGA ACACAGGAGA
  AAACAGGTTG TGTGGGAGGT GGGAGAGGAG CGTTAGTGAG GCAGGAGGAA GAGTGGAGGG
  GGAAGAGTTT TGCAAAGAGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336236	CHEV_4_132313920	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261881969					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	674 bp distal
Gm70165	predicted gene, 70165	197 bp upstream
Rr601063	regulatory region 601063	764 bp distal
Rr601064	regulatory region 601064	490 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	758 bp upstream
Tssr43702	transcription start site region 43702	898 bp upstream
Tssr43703	transcription start site region 43703	853 bp upstream
Tssr43704	transcription start site region 43704	818 bp upstream
Tssr43705	transcription start site region 43705	765 bp upstream
Tssr43706	transcription start site region 43706	746 bp upstream