rs261827654 SNP Detail

Summary

• ID
  rs261827654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65691886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTTTGCT CTAATTTTGT ACCTTTTTCC
  TGGCATCATT TTCAACTGtt cttttctttt cctttccttc ctttctttct ttctttcttt
  ctttctttct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
  Y
  tttTTCCTGC TGTTTCCTAC CAACCCTCAG GCTTTCTGTG CAAGAGGGAT TCCACAGACT
  CCGGGAGGGT AATGAAAAGG TCAGGAGGCT ATGGAGATTT CAATGAGGGA CCATATCCTC
  TAGGATGAGG TGGCCGCTGT CTTGGCACCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325892630	CHEV_X_63901455	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261827654					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65691886 () rs orientation: forward

Symbol	Name	Function Class
DXMit87	DNA segment, Chr X, Massachusetts Institute of Technology 87	828 bp distal
Gm61789	predicted gene, 61789	within coordinates
Rr691649	regulatory region 691649	548 bp proximal
Rr691650	regulatory region 691650	1049 bp proximal
Rr691651	regulatory region 691651	1190 bp proximal
Slitrk2	SLIT and NTRK-like family, member 2	1038 bp upstream
Tssr161127	transcription start site region 161127	1096 bp upstream
Tssr161128	transcription start site region 161128	1156 bp upstream