rs261800145 SNP Detail

Summary

• ID
  rs261800145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCTCTG CCCCTCAAGC
  TAGATAACCT GGGGTGAGAA ATCTCACCCT TTCTGCACCG GGCCACTCCC TTGTGGAGTT
  GAGAGTCTGA GAGAGACTTG GGGTTGCCAT AAAGATTCCG GCCATTTTAT CTGTAGCAAA
  GGCTCAACCT GAACGTGGGG CAGGCAGGTG TGAGTGTAGG GAAGTGGGAA GGGAGAATGA
  R
  GGAGACAGAG GAGAGCTGGG TAGACACACA CAGACACACA CAGACACACA GACACACAGA
  CACACACACA CACACACACA CACACACACA CACAGAGCTT GCCCACGGAC CTGCTCACCT
  GAGGCTGAAA TGGTCTTTCC TGCTCTATAA TGCTCAACGT TCAGCATCTG GATCGAGGCA
  GGTCACAGGT CCCTGTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367285	CHEV_4_137325326	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261800145					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			156 bp distal
Rr602711	regulatory region 602711			222 bp proximal
Rr602712	regulatory region 602712			1493 bp proximal
Tssr44137	transcription start site region 44137			252 bp downstream
Tssr44138	transcription start site region 44138			283 bp downstream
Tssr44139	transcription start site region 44139			537 bp downstream
Tssr44140	transcription start site region 44140			551 bp downstream
Tssr44141	transcription start site region 44141			568 bp downstream
Tssr44142	transcription start site region 44142			577 bp downstream
Tssr44143	transcription start site region 44143			593 bp downstream
Tssr44144	transcription start site region 44144			619 bp downstream
Tssr44145	transcription start site region 44145			644 bp downstream