rs261718417 SNP Detail

Summary

• ID
  rs261718417
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102109743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT GAAGTCATTT GCATAAAATA
  K
  CTCAATCTTC AGAACAAGTC TTTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854817	CHEV_3_102006350	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261718417					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102109743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			1182 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			710 bp proximal
Rr582208	regulatory region 582208			1526 bp proximal
Rr582209	regulatory region 582209			1629 bp proximal
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant