rs261711809 SNP Detail

Summary

• ID
  rs261711809
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152495784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGACATA TACCTGGACT
  CGGGAGGAGA ATCATAAGTT CAAAGCCAGC CATGTCAATA TAATCTATCT AAAAAGAACT
  ATCCCAAAGA ACAATTACAT GAGGTCCTGG TAATTATTAA TGGCTCTATC TGGAGTTCCT
  GGTGCCACTC ACCTGAAACA ATGAACACTC CAGACTCTTT AAGAGGACCC CTCTCCCAGA
  T
  CTCCTCACAG CTACAGAGGG CACTGTCTGG CACATGAGTA TCATTGGGGC AGTAGGAACC
  ATCAGTAAGG GTTCTCGGGA CAGTTGTTGA CTTGTCTCAT TAATTTTGTA ACATCCCTTT
  GGTTTCCAAT TTGTTTCTCA ATTTACAACT GAAGGGACCT TACACAATCT TTGAAATTAT
  CCAGATAGGG AGGGGCACAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562916	CHEV_2_152479600	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261711809					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152495784 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	293 bp distal
Rr567411	regulatory region 567411	181 bp proximal
Rr567412	regulatory region 567412	478 bp proximal
Rr567413	regulatory region 567413	1990 bp proximal
Tssr26849	transcription start site region 26849	389 bp downstream
Tssr26850	transcription start site region 26850	397 bp downstream
Tssr26851	transcription start site region 26851	424 bp downstream
Tssr26852	transcription start site region 26852	450 bp downstream