rs261701413 SNP Detail

Summary

• ID
  rs261701413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAATATGT GGGGCTTGGA ATTTTTTTCA
  GGCTCCTAAA TTTAACCCAC AAGAATTCTT TCCTAAATAC CACACCGCTC ACTGCCCTCC
  AGAACAGGGG AATTTGCATC TCAAATGTCC GGGGCCAGCA CCTTAAGTCT GAGTGCTCCA
  R
  TCTTCCTTGT GCATGACAGT TGCTCTGAGT TAAGTCTGAG TGCTCCCATC TTCCTTGTGC
  ATGACAGTTG GTCTGAGTTA AGTCTGAGTG CTCCCATCTT CCTTGTGCAT GACAGTTGGT
  CTGAGTTAAG TCTGAGTGCT CCCGTCTTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322260058	CHEV_7_80566095	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261701413					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070957 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1041 bp upstream
Rgma	repulsive guidance molecule family member A	1310 bp downstream
Rr648938	regulatory region 648938	1393 bp distal
Rr648939	regulatory region 648939	1513 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	847 bp proximal
Rr648942	regulatory region 648942	1089 bp proximal
Rr648943	regulatory region 648943	1442 bp proximal
Tssr72937	transcription start site region 72937	1330 bp downstream