rs261685574 SNP Detail

Summary

• ID
  rs261685574
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66682729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCAATC CAAATTCATG
  GGAGGACTGC AGTAAATAAC TTTCTACTTA ACAGGAAACA AAACATTACC ATTCTGCCAT
  CTCTATGAGT GCAGAAGATA GATAAAGGTA ATCTGAAATA AGTAACCTAT GAATTTAAGG
  ACATTCTGTC ATCCTTTCCC CAGCCCAGAG AGACAGAGAG GTTTCTCTCT GTTAGGAACA
  M
  GTTCCACTTG TTGAGATAGA TACCCATTGT TGAGGCTTCC TTCTGTCCAC TGGAGCAACA
  GCAGAAATTT GTCTTCAGAA AAAAAAAAAG AGGGAGTTCC ATGTCTTGAC CTTGTAGTTT
  TACCTCACCA TATTTAACAC TGCTAGAAAT TTTCTGCTGA GAATGTGTGT GTAATTAGGC
  AGGCTTTGCC TGGCTAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379492	MGP_WTSI_15_66642442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261685574					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379492	MGP_WTSI_15_66642442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66682729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr503566	regulatory region 503566			483 bp distal
Rr503567	regulatory region 503567			within coordinates
Rr503568	regulatory region 503568			427 bp proximal
Rr503569	regulatory region 503569			1025 bp proximal
Rr503570	regulatory region 503570			1703 bp proximal
Sla	src-like adaptor			Intron
Tg	thyroglobulin			Intron
				Noncoding-Transcript-Variant
Tssr131484	transcription start site region 131484			1354 bp upstream
Tssr131485	transcription start site region 131485			1480 bp upstream
Tssr134583	transcription start site region 134583			737 bp upstream
Tssr134584	transcription start site region 134584			253 bp upstream
Tssr134585	transcription start site region 134585			1178 bp downstream
Tssr134586	transcription start site region 134586			1232 bp downstream
Tssr134587	transcription start site region 134587			1307 bp downstream
Tssr134588	transcription start site region 134588			1757 bp downstream
Tssr134589	transcription start site region 134589			1779 bp downstream
Tssr134590	transcription start site region 134590			1805 bp downstream
Tssr134591	transcription start site region 134591			1836 bp downstream