rs261651335 SNP Detail

Summary

• ID
  rs261651335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132741194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGGCT GGGCAGGCGT
  TTCCCGCTGG ACCAGTTGGT GTCAGGCGGG ACTTGGCCCC AGCTCCCTGG GCTGAGCTCA
  GGGTGTGAGG ACAAGCTTTG CCTCCGGGTC AGGGTGGCCA CATTCTGTCC GCTCTCGCTG
  TTGCCGCTGG CAGGGCAGGG GCATGAGCCC AGGCCTGGGC AGAGTCCTGC CAGGAGCATT
  Y
  GGGGTGTTTC TATTGTTGAC TTGTCCCCGT TCAGTGTGGC CCGGTGTGTG TGTCTGTGTG
  CGCCAGGGCT GTAAGTGAAA GATTACCAGT CTGTTCATCC CCCCCCCACC CCCCCCACCC
  CCCCAGCATG GGAGGAGCAG GCAGGCTCGG CTGTGGTGTT CAGCTGTGGA GGGACCCTCG
  AGGTAGCACA TGCATGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338148	CHEV_4_132569798	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261651335					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132741194 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			742 bp distal
Rr601156	regulatory region 601156			1669 bp distal
Rr601157	regulatory region 601157			within coordinates
Rr601158	regulatory region 601158			1033 bp proximal
Rr601159	regulatory region 601159			1878 bp proximal