rs261614182 SNP Detail

Summary

• ID
  rs261614182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156488472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACACAC GTGCACCTTT
  CTACTGGACC AGAGATTATT CGGCGGGAAT CGGGTCCCCT CCCCCTTCCT TCATAACTAG
  TGTCGCAACA ATAAAATTTG AGCTTTTTTT TTTTTTTTTT CAGAATGAAA TTGTCTTAGT
  TCCGTTTTTT CTTCCGCCCC GTCTAGATTC CTCTCTTACA GCTCGAGTGG CCTTCTCAGT
  Y
  GAACCGTTCA CGTTGCGAGC TGCTGGCGGC CGCAACACAC AATGAAGTCT GCAAGGAGCC
  TCGGTGAAGC ATTCAGACTG GTTAAGTTCC TTGCCCGCAG AGTCCTTCTG AGGATCTGGG
  CATACAGAGC ACAGTGATCT TGGAGTGGCT GTTCCTGCTC AGCAGCCTCC ACGGCCCACT
  GCAAATGTGA GAGACCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	I/LnJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss352042509	MGP_WTSI_1_158591033	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	I/LnJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs261614182					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352042509	MGP_WTSI_1_158591033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156488472 () rs orientation: forward

Symbol	Name	Function Class
Rr421219	regulatory region 421219	1776 bp distal
Rr421220	regulatory region 421220	139 bp distal
Rr421221	regulatory region 421221	within coordinates
Rr421222	regulatory region 421222	1106 bp proximal
Tor3a	torsin family 3, member A	Intron