AGCCACACAC GTGCACCTTT CTACTGGACC AGAGATTATT CGGCGGGAAT CGGGTCCCCT CCCCCTTCCT TCATAACTAG TGTCGCAACA ATAAAATTTG AGCTTTTTTT TTTTTTTTTT CAGAATGAAA TTGTCTTAGT TCCGTTTTTT CTTCCGCCCC GTCTAGATTC CTCTCTTACA GCTCGAGTGG CCTTCTCAGT Y GAACCGTTCA CGTTGCGAGC TGCTGGCGGC CGCAACACAC AATGAAGTCT GCAAGGAGCC TCGGTGAAGC ATTCAGACTG GTTAAGTTCC TTGCCCGCAG AGTCCTTCTG AGGATCTGGG CATACAGAGC ACAGTGATCT TGGAGTGGCT GTTCCTGCTC AGCAGCCTCC ACGGCCCACT GCAAATGTGA GAGACCTGCC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
AKR/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
CBA/J |
I/LnJ |
LG/J |
LP/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss352042509 | MGP_WTSI_1_158591033 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
AKR/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
CBA/J |
I/LnJ |
LG/J |
LP/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs261614182 | SNP | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss352042509 | MGP_WTSI_1_158591033 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr1:156488472 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr421219 | regulatory region 421219 | 1776 bp distal | ||||||
Rr421220 | regulatory region 421220 | 139 bp distal | ||||||
Rr421221 | regulatory region 421221 | within coordinates | ||||||
Rr421222 | regulatory region 421222 | 1106 bp proximal | ||||||
Tor3a | torsin family 3, member A | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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