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rs261614182 SNP Detail
Summary
  • ID
    rs261614182
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:156488472 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCCACACAC GTGCACCTTT
    CTACTGGACC AGAGATTATT CGGCGGGAAT CGGGTCCCCT CCCCCTTCCT TCATAACTAG
    TGTCGCAACA ATAAAATTTG AGCTTTTTTT TTTTTTTTTT CAGAATGAAA TTGTCTTAGT
    TCCGTTTTTT CTTCCGCCCC GTCTAGATTC CTCTCTTACA GCTCGAGTGG CCTTCTCAGT
    Y
    GAACCGTTCA CGTTGCGAGC TGCTGGCGGC CGCAACACAC AATGAAGTCT GCAAGGAGCC
    TCGGTGAAGC ATTCAGACTG GTTAAGTTCC TTGCCCGCAG AGTCCTTCTG AGGATCTGGG
    CATACAGAGC ACAGTGATCT TGGAGTGGCT GTTCCTGCTC AGCAGCCTCC ACGGCCCACT
    GCAAATGTGA GAGACCTGCC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CBA/J
I/LnJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ss352042509 MGP_WTSI_1_158591033 EVA_MGPV3 EVA_MGPV3 f SNP T T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CBA/J
I/LnJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
rs261614182 SNP T T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss352042509 MGP_WTSI_1_158591033 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:156488472 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr421219 regulatory region 421219 1776 bp distal
Rr421220 regulatory region 421220 139 bp distal
Rr421221 regulatory region 421221 within coordinates
Rr421222 regulatory region 421222 1106 bp proximal
Tor3a torsin family 3, member A Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory