rs261505097 SNP Detail

Summary

• ID
  rs261505097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28077774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGGCCG TGAGCAAACT
  GGCACTTGGC CCCGTAGCGA CAACGCCCGC TTTCTGAGTA GGTCCGACAG AGCTCGGTCT
  TGTATCGAGA GGAGGTGGTG GGAGTTGCAG TAGGCGAAGT AGGTGAGGGT GACAGCTCAG
  GGCCTGGGCG GGGAGCCAAA GGTGCAAAAC CAGGGGGTGG GGGTACCCAG CCACAGCTTC
  K
  GCCCTCCACC AGGCTAGTGG AGCGGCCAGT CAGGCGAGAG GTGACCCCAG ACGGGATGGA
  GTCCGAGTTT ATGTTCCAAA GTCCTCCGAG GGATTCGGTT CCTCCGTGGT CGGATGACAG
  GTCATGGCTC ATCGACTGGA GGCTCTGAGA GGAACAGGGT TCGGTTAGGC CACCAGAAAA
  GGTAAGGTGA CGTCGCCCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858527	MGP_WTSI_7_29163368	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261505097					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858527	MGP_WTSI_7_29163368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28077774 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	631 bp upstream
Gm73785	predicted gene, 73785	1675 bp upstream
Rr380568	regulatory region 380568	1563 bp downstream
Rr400210	regulatory region 400210	861 bp upstream
Rr644239	regulatory region 644239	1185 bp distal
Rr644240	regulatory region 644240	395 bp distal
Rr644241	regulatory region 644241	141 bp proximal
Rr644242	regulatory region 644242	642 bp proximal
Rr644243	regulatory region 644243	896 bp proximal
Rr644244	regulatory region 644244	1781 bp proximal
Rr644245	regulatory region 644245	1894 bp proximal
Tssr2163	transcription start site region 2163	1007 bp downstream
Tssr2164	transcription start site region 2164	1140 bp downstream
Tssr2165	transcription start site region 2165	1183 bp downstream
Tssr65461	transcription start site region 65461	1786 bp downstream
Tssr65462	transcription start site region 65462	1611 bp downstream
Tssr65463	transcription start site region 65463	854 bp downstream
Tssr65464	transcription start site region 65464	296 bp downstream
Tssr65465	transcription start site region 65465	1003 bp upstream
Tssr71490	transcription start site region 71490	1355 bp upstream
Tssr71491	transcription start site region 71491	1258 bp upstream
Tssr71492	transcription start site region 71492	1180 bp upstream
Tssr71493	transcription start site region 71493	1130 bp upstream
Tssr71494	transcription start site region 71494	1095 bp upstream
Tssr71495	transcription start site region 71495	1065 bp upstream
Tssr71496	transcription start site region 71496	718 bp upstream
Tssr71497	transcription start site region 71497	470 bp upstream
Tssr71498	transcription start site region 71498	409 bp upstream
Tssr71499	transcription start site region 71499	315 bp upstream
Tssr71500	transcription start site region 71500	291 bp upstream
Tssr71501	transcription start site region 71501	264 bp upstream
Tssr71502	transcription start site region 71502	239 bp upstream
Tssr71503	transcription start site region 71503	198 bp upstream
Tssr71504	transcription start site region 71504	167 bp upstream
Tssr71505	transcription start site region 71505	150 bp upstream
Tssr71506	transcription start site region 71506	136 bp upstream
Tssr71507	transcription start site region 71507	89 bp upstream
Tssr71508	transcription start site region 71508	55 bp upstream
Tssr71509	transcription start site region 71509	within coordinates
Tssr71510	transcription start site region 71510	37 bp downstream
Tssr71511	transcription start site region 71511	76 bp downstream
Tssr71512	transcription start site region 71512	131 bp downstream
Tssr71513	transcription start site region 71513	747 bp downstream
Tssr71514	transcription start site region 71514	876 bp downstream
Tssr71515	transcription start site region 71515	898 bp downstream
Tssr71516	transcription start site region 71516	1932 bp downstream
Zfp36	zinc finger protein 36	Coding-Synonymous