rs261503871 SNP Detail

Summary

• ID
  rs261503871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59547931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCACAC AAAAAGCTAA
  CTTGTTTCCC CACACCCGAA GTTGAACCTT CTGAAGACGA ACACTTCATA GCCCTTCCTG
  AACTGATATA ATGGCACTTA TGGCATAAAT CACTGAAAGT TATTTCACAC GTAAAATGAA
  TCAGAGTCGG GTAATGAGAA GCCAATGCTC AAGGTGAAGC GTTCGCTCGC AAAGTAGCTC
  Y
  CATTAAATAA AAATACTTTA AAGAGCATCA CAACCATAAA TCAAAATCTA AAATTGCACT
  TTGATATCTG CAGCAGTGTG CAATCTGCAT TCAAATGAGA TAAACCATAT ATCACAATAT
  TGTGAAATTA AGATAAACGA AACCTAACGA GGGCAAAAAT TGTAAAATTC TAGTGTCCTC
  ACTTAAACAC GTATGATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141174	CHEV_4_59560803	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261503871					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59547931 () rs orientation: forward

Symbol	Name	Function Class
1700018M17Rik	RIKEN cDNA 1700018M17 gene	1640 bp upstream
Cpgi14347	CpG island 14347	601 bp proximal
Ptbp3	polypyrimidine tract binding protein 3	Intron
Rr593080	regulatory region 593080	1242 bp distal
Rr593081	regulatory region 593081	within coordinates
Rr593082	regulatory region 593082	195 bp proximal
Rr593083	regulatory region 593083	796 bp proximal
Tssr41946	transcription start site region 41946	1344 bp downstream
Tssr41947	transcription start site region 41947	1383 bp downstream