rs261493648 SNP Detail

Summary

• ID
  rs261493648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101871558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagagaata gtgtaaaccg tggggtttat
  aaacaatgag gattcacaaa gtccaagatc aaggctctgt tggcccggtg gtctggtgat
  gacctctggc ttcatcaatg gcacgtccct gcctcaggcc tcttttataa gggtacttat
  R
  ttattcacaa ggaccccctc tcaggaaata ttcacttcca aagacctacc tcctaataGA
  ATATTTGGtc caactgcttt gataaaatac cgacaaaagc aatttaagga acaaagggtt
  tactttggct cccggtttga agatacaatc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433851	CHEV_2_101881370	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261493648					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101871558 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1532 bp downstream
Rr561618	regulatory region 561618	1574 bp distal
Rr561619	regulatory region 561619	1129 bp distal
Tssr19089	transcription start site region 19089	1616 bp downstream
Tssr19090	transcription start site region 19090	1577 bp downstream
Tssr19091	transcription start site region 19091	1554 bp downstream