rs261493479 SNP Detail

Summary

• ID
  rs261493479
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72359521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGAGGA TTGACTGAGT
  TTGAGACCAG CCTGGGTCAT ATATAGTAAA TTCCAGGACA GCTTAACCTA GGCTTCAAGG
  CTACAAAGTA AGACTTTGTC TATTAAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAAAGAAA GAAAGGAAGA AAGGAAGAAA GAGAAAAGAG AAGAAAACAA
  M
  AGAAAAGAAA AGAAAGGAAA AGAAAAGAGG AGAAAAGAAG AGAAAAAAGA AGGCCATGTG
  AATTTGACTC CAATGTAAAA TGAAAGCAGC CTCTTACAGG AAGTGCTGAC TCTGGCTTTT
  CTCTGTTCTA AACTCTTTTT TTTTTTCCTT TCCGAGACAG GGTTTCTCCG TATAGTCTTG
  GCTGTCCTGG AACTCATTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321821605	CHEV_6_72332532	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261493479					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72359521 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632158	regulatory region 632158	1580 bp distal
Rr632159	regulatory region 632159	1950 bp distal
Rr632160	regulatory region 632160	841 bp proximal
Rr632161	regulatory region 632161	942 bp proximal
Tssr61449	transcription start site region 61449	833 bp upstream
Tssr61450	transcription start site region 61450	779 bp upstream