rs261490942 SNP Detail

Summary

• ID
  rs261490942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21948244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAAGTC TCCCTTGAGA
  GTATATAATG AAGTATTTTC ATTACAGGTT CCAATTCAAT CTATCGGTGC AATAGAATAA
  ACCTCAACTA CATAACTTAA TTTGACCCTA AGTTTGATGG TGTCTTGCAG CAAAGTTGCA
  GAGTCAAATG CTAATATTCT CTAGCAAAAC TCGATTTTAA CTCCAGCAGT GAAATTTCTC
  Y
  ATATTTATAA CCCTGGAAAA GTGAATTCAG AGTTAAAAAC CCCAACACAG ATGAAATTAG
  GCACTGTAAA CAAACGTGGC TGCTTTTGAA CAAAGAGCAC AAACAGATAA ATAGTTTTAG
  TACAAAATTT AAATTAAACA GGTGTAGACT AAATATATTT AACATTCAAG TAATAAGAAA
  ATGGCTTTAA AAGAAGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367639679	MGP_WTSI_6_21898245	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261490942					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367639679	MGP_WTSI_6_21898245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21948244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	956 bp proximal
Gm68432	predicted gene, 68432	within coordinates
Ing3	inhibitor of growth family, member 3	mRNA-UTR
Rr399583	regulatory region 399583	954 bp upstream
Rr399584	regulatory region 399584	1629 bp upstream
Rr627030	regulatory region 627030	304 bp proximal
Rr627031	regulatory region 627031	1114 bp proximal
Rr627032	regulatory region 627032	1423 bp proximal
Rr627033	regulatory region 627033	1760 bp proximal
Tssr55136	transcription start site region 55136	1389 bp upstream
Tssr55137	transcription start site region 55137	1743 bp upstream