rs261479373 SNP Detail

Summary

• ID
  rs261479373
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTTAG GGCAGATCTT
  GGGTTTGGCC ACTGGTCATA TGGTATAAGC TACACCATGA ACCAGCACCA CAAACCATTC
  TCACCGAAGC CTTACCAATC ATTTGAAGAA CTCAGGAGAA AGAGGCTGCT GAGTTGGAAG
  TTCTCTGTGG TAAAATTGAT GCTGTTGGTG CTGGTTAAGA GCACTGACTG CTCTTCGATA
  S
  GTTCTGAGTT CAATTCCCAG CAACCACATG GTGGCTCACA ACCATCTATA ATGAGAGCTG
  ATGCTCTCTT CTGGTGTGTC TGAAGATAGC TACAGTGTAC TCATATATAC ATTAAATAAA
  TAAAATTTAA AAATTAAAAA AAAAAATCGA TGCTGTCCTC CCCTGCTGAT AGAAAAGCCT
  CTTCCAGGTG CTGTCTTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363303974	MGP_WTSI_4_132441985	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C	C	C	G	G	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261479373					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C	C	C	G	G	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363303974	MGP_WTSI_4_132441985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	1079 bp distal
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	within coordinates
Rr601102	regulatory region 601102	1529 bp distal
Rr601103	regulatory region 601103	757 bp distal
Rr601104	regulatory region 601104	1590 bp proximal
Rr601105	regulatory region 601105	1774 bp proximal
Rr601106	regulatory region 601106	1884 bp proximal
Stx12	syntaxin 12	1612 bp upstream
Tssr39426	transcription start site region 39426	1518 bp downstream
Tssr43723	transcription start site region 43723	1569 bp upstream
Tssr43724	transcription start site region 43724	1547 bp upstream
Tssr43725	transcription start site region 43725	1280 bp upstream