rs261472634 SNP Detail

Summary

• ID
  rs261472634
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141307910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTTGAA TAACCCTTTC
  ACGTGGGTCT AATATCAGAT ATTTATATTA TTATTCATAA CAGTTATGTT TCAAAACTAT
  AGTTATGAAA TATCAGAGAA ATAATTTTAT TGTTGAGGTC ACCACAACAT GGGGAACTAT
  ATTAAATGTT CTGCAGTATC AGAAAAGTTG AGAACCACTG CTCTAGAGAA CCAGCCATGG
  W
  ATCTGCCACA GAGAGATAGT AATGCCCACT TAACAGACTG GAGCATAGAT ATAAGACTAT
  AATACATAGG GAAGGTACTA TAGTAACAGT GCATCAAGAA TCCCATGACT TTATATTGTT
  ATTATCATTT TGTCACTTAC AGGGGCCATC TTATGCTTTT AAGAGAGAAG AGCCTTGAGC
  TTGGAGATGG GTCCAAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993701	CHEV_3_141265113	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261472634					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141307910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			503 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant