rs261464821 SNP Detail

Summary

• ID
  rs261464821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137678516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTTGGG TAACAGTTCT
  AGGGTGTCTT TGAAAGGGAG AGTCAAGCCA GGACAGTGGT GGCGCATGCC TTTAATCCCA
  GCACTCGGGA GGCAGAGGCA GGCGGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAGAGT
  GAGTTCCAGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCGAAAAACC AACCAACCAA
  M
  CAAACAAACA AACAAAAAGA GAGAACCTGA GCCCTCCATT CCACTCTCTG GCCTTGTGGG
  GCCTGAGTTC TCACAATTCT AGAAGGTTCC CAGCCTAACT GTTCTCTGGT TTTTTTCAAG
  ACAGGGTTTC TCTGTATAGC CCTGGCTGTC CTGAAACTCA CTCTGTAGAC CAGGCTGGCC
  TCGAACTCAG AAATCTGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ
ss363428388	MGP_WTSI_4_137507120	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ
rs261464821					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363428388	MGP_WTSI_4_137507120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137678516 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	Intron
Rr398622	regulatory region 398622	1678 bp upstream
Rr602793	regulatory region 602793	1595 bp proximal
Rr602794	regulatory region 602794	1820 bp proximal