rs261459356 SNP Detail

Summary

• ID
  rs261459356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130506468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTCAG TAAACCAGGC
  TGGTCTCAAA CTCAATGCTG GGATTAAAGA CATTTTCCAC CACACTAGGC TTTGGGTCTT
  TTGGGTTGTT TGTTTGTTTG TTTGTTTTGC TTTTGGGGAG TTTTTGTTGG AGGTGGTGCT
  GGTTTTAGTT TGGTTTTCGT ATTTTTGGAA GGCTCACTTG GTTTTGTTTA TTGGTTTTTT
  K
  GGGGGGGGGT TGTTGTTTGT TTTTTGGAAG GGTCATAGAC CATGTGAAGC TGTTTAAAAA
  AAAAAAACCA CCTATAAATT CTCTTCCCAG AAAAAAAACG CCCTCATATA CCCACCCAAT
  GTAGAATAAA ATTATAGGAA GTTCTCAGAC CAAAGTTAAA AGAGAAGGAA GAGAGTTGCA
  GACGGATGCC TAGGGACTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
ss359721177	MGP_WTSI_3_130415737	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
rs261459356					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359721177	MGP_WTSI_3_130415737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130506468 () rs orientation: forward

Symbol	Name	Function Class
Rr585199	regulatory region 585199	1496 bp proximal