rs261436555 SNP Detail

Summary

• ID
  rs261436555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGATAG CACTGTAAGA
  AATTAAGATG AGAAGACGAA GTCAAAGAAA CCAAGAGAAC CGGAGGAAGG CTATAGAGTT
  AAGAACTGGA AAAGAAAAAT GACAAGAATA ACACCAAATC TGTGCCACAG TCTGCTAACC
  AGCCACCAGT TTCCACCGGG GGTGGGGGGG GGTGGGGGGT GGGGGTGGGG GTGGTGGGGG
  R
  GCCTGTTGAG AGGGAAGGGT GGTGATTAGC ATAGCAGCAG AGTAAAGCCA GCAACTCCAT
  TGCAGGCTTG GAGACAGCAT GCAGAGATGC TACAGTACAG CCCCCGTGCT TGTGGAACAA
  TGACCTAGAG CACTAAGAGT TTCGCAAAGA CAGCATGCTC TGTATTCAGA AAGACAGCCT
  TGTTGGATAG GGTGTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359101402	MGP_WTSI_3_104857466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261436555					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359101402	MGP_WTSI_3_104857466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1305 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1402 bp upstream
Rr367520	regulatory region 367520	1398 bp downstream
Rr582659	regulatory region 582659	1608 bp distal
Rr582660	regulatory region 582660	912 bp distal
Rr582661	regulatory region 582661	within coordinates
Tssr34913	transcription start site region 34913	1974 bp upstream
Tssr34914	transcription start site region 34914	1831 bp upstream
Tssr34915	transcription start site region 34915	1610 bp upstream
Tssr34916	transcription start site region 34916	1561 bp upstream
Tssr34917	transcription start site region 34917	1397 bp upstream
Tssr34918	transcription start site region 34918	328 bp downstream