rs261422163 SNP Detail

Summary

• ID
  rs261422163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85112122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGAGCC ACCATGTGGT
  TGCTGGGATT TGAACTCTGG ACCTTCGGAA GAGCAGTCGG GTGCTCTTAC CCACTGAGCC
  ATCTCACCAG CCCAAGGAAA CGTTTCTTTT CTCTCCACTG ATACATTATT TTGTTGAAAA
  TAAGTAGTTT GGGATTCGCC AGTGAGATGG CTTGGTGGGC ACGTGCTCAG TGTGGATGCC
  Y
  GATGACCTGT GTTTGACCCT GGGACCCATG TGAAGGCAGA TGGACAAAAG GAACTCCATA
  AAGTTGTCCT TTGATCTCTA CAAACATGTG GCACATGTGT GTGTGTCCTC ACATCCACAC
  AATAATAAGT AAAAATAAAT AAGTTTGGAA ATGCTTAGTT ATTTAATATT TTAAACTTAG
  CATCATGATA TAAAATGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320372995	CHEV_2_85121935	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261422163					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85112122 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	307 bp distal
Rr560462	regulatory region 560462	1930 bp proximal