rs261361243 SNP Detail

Summary

• ID
  rs261361243
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119670683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGAGTA AAGTTACTTT
  TTGTTTTTTC TCAGTGGTAC CTCTTTAAAA GCTAAAACAA AACTGGATTA GATGCCATCT
  GGGTGGCTGA AGTAGTTGGC ATGCACAGTT TAGGCTGGGG GTGGTTTATC TCCCTGCACT
  GTTGTTCAAC CTTCATGCTC AACTTTGTTC CAACCTCCCC CCCCCAGACC CCGCCCCCCC
  M
  AAAAAAGTTA AAAACAGAAC AATGACAGCA ATGAAACCTT GCTAACAAAA ATGTAAAGAG
  GAGCCAGATC AGAATAGTCA AATACCAAAG CCCAGGTGGC AGTTTCAATT TCCGATGTAA
  GTAGAAGAAA ACCTGTCCTA GAACGGGAAC TGGGGCTGAA TCTCAAGGTG GATCAGAAAT
  GGTGCCAGAA CCATCCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363025824	MGP_WTSI_4_119486091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	A	A	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261361243					SNP	C	C	C	C	C	A	A	A	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363025824	MGP_WTSI_4_119486091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119670683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14707	CpG island 14707			1305 bp proximal
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			343 bp downstream
Rr398436	regulatory region 398436			within coordinates
Rr598655	regulatory region 598655			482 bp distal
Rr598656	regulatory region 598656			519 bp proximal
Rr598657	regulatory region 598657			1020 bp proximal
Tssr38753	transcription start site region 38753			383 bp downstream
Tssr38754	transcription start site region 38754			821 bp upstream
Tssr38755	transcription start site region 38755			889 bp upstream
Tssr38756	transcription start site region 38756			1018 bp upstream
Tssr38757	transcription start site region 38757			1047 bp upstream