rs261334446 SNP Detail

Summary

• ID
  rs261334446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13082537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCAACCA GTTCTTTGAA
  GTTTGGGCTA GGGCTCCCCA TGTGGTAGCA GGGGAGATGT GAACCTGCGG AGTTTCTAAA
  TCTGAGTCAC AAAACCAAGA GTTGTGTTTT ATAAAAATGA AGCGAGAAGG GATATGTTTT
  GTGGATGTGG AGTCAGGTGT GGGGGAAGGG AGTGCCTCCG AGGTCCCATG CTGAGGCATC
  Y
  CTCTCCCCTC TTGCCCCCCC CCCCCCCCAC AGAAGGTATA GTGTAGAATA GAGTTTATTC
  AGGACATGGA GAGGGGAGTT GAGGGGATAG AGACAGAGAA AGACATAGAG AGAGTAGAAG
  AGTACAGGCA AGCCATTGGG GGGGGGGGAT GGGGAGAGAG GGTGATCAGA GGAGAGGACA
  GAGTGAAAGC AAGAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	LEWES/EiJ	NOD/ShiLtJ	QSi5/Ianm	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379478521	MGP_WTSI_10_12926599	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	LEWES/EiJ	NOD/ShiLtJ	QSi5/Ianm	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261334446					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379478521	MGP_WTSI_10_12926599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13082537 () rs orientation: forward

Symbol	Name	Function Class
Gm47402	predicted gene, 47402	1148 bp downstream
Phactr2	phosphatase and actin regulator 2	924 bp downstream