rs261300010 SNP Detail

Summary

• ID
  rs261300010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:20939743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGTATAAGTT ATGGCCTGGA CCCTGCTGCA GATGCTGTGA GAGTCTGGGG
  R
  AAGATCACAT GGGTCGAGGG TTTCTCTACT GGTCAGGATG CTTTTCTCAT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376858779	MGP_WTSI_9_20832891	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261300010					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376858779	MGP_WTSI_9_20832891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20939743 () rs orientation: forward

Symbol	Name	Function Class
Gm47079	predicted gene, 47079	within coordinates
Icam1	intercellular adhesion molecule 1	mRNA-UTR
Icam4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	985 bp upstream
Rr674673	regulatory region 674673	436 bp proximal
Rr674674	regulatory region 674674	1195 bp proximal
Rr674675	regulatory region 674675	1697 bp proximal
Tssr83950	transcription start site region 83950	921 bp downstream
Tssr83951	transcription start site region 83951	611 bp downstream
Tssr83952	transcription start site region 83952	509 bp downstream
Tssr83953	transcription start site region 83953	483 bp downstream
Tssr83954	transcription start site region 83954	456 bp downstream
Tssr83955	transcription start site region 83955	362 bp downstream
Tssr83956	transcription start site region 83956	292 bp downstream
Tssr83957	transcription start site region 83957	219 bp downstream
Tssr83958	transcription start site region 83958	162 bp downstream
Tssr83959	transcription start site region 83959	10 bp upstream
Tssr83960	transcription start site region 83960	978 bp upstream
Tssr83961	transcription start site region 83961	996 bp upstream
Tssr88351	transcription start site region 88351	163 bp upstream
Tssr88352	transcription start site region 88352	136 bp upstream
Tssr88353	transcription start site region 88353	38 bp upstream