rs261295737 SNP Detail

Summary

• ID
  rs261295737
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100690180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAGGAG TACACATGGA
  GGGATCCATG GCTCCAGTCT CATATGTAGC AGAGGATGAC CTTGTTGGGC ATCAATGAGA
  GGAGAGGCCC TTGGTCCTGT GAAGGCTTGA TGCCCCAGTG TAGGGGAATG TGAAGGTGGG
  GAGGTGAGGG TAGGGGAACA CCCTCATAGA AGCAGGGGGG AGGGGGATGG GACAGGGGGC
  K
  GGGGGGGGCG AGGTGGGGAT CCAGAAAGGG GGTAGCATTT GAAATGTAAA TAAATAAAAT
  ACCCAATAAA AAAGAGAAAA CCTAAACATG TGTTTAATAA TAATAATAAT AATAATAATA
  ATAATAATAA TAATAATAAT AATTTTGTCT GTCAAGCCCT CCTCAGAAGT TTTGACTCTG
  GAGTAAATAG GAAAGGAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	SJL/J	SPRET/EiJ
ss362600721	MGP_WTSI_4_100505588	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	SJL/J	SPRET/EiJ
rs261295737					SNP	G	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362600721	MGP_WTSI_4_100505588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100690180 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	725 bp proximal