rs261280786 SNP Detail

Summary

• ID
  rs261280786
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60379382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAAGAA CTACAGGCAA
  CTAATGTAGC TTGACAGCTT GAGAAATCAA ATACCGAATG GCCAGCCCTG AAAACATACA
  AATGATGTTA TGCAGATAAT ACCTAAGTAT TTATAGATAT ATGTTAAATA CATGTATGTG
  GGTGTGACAA TTAACAGAGA GACCATAAAC TTGACACAGA GCAAGGAAGG GGTATGGGAG
  K
  GTCTAGAGGG AGCAAACAGA AGAGGGGAAT GATGTAACTA TTCTCTACAA AGAAAGGAAA
  TAAGTTTCAG ATTTTTTTAA AAAAGAAATA AAACTTAATG TTATACCCTC AGGATGATGG
  TTTCTAAAGT CCAGAAAATG GTTCTTGCAG TATATGAAAC TTTGCATAAC TCTTGTGTTA
  TTCTTGCAAT CCACCCCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358136973	MGP_WTSI_3_60275883	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261280786					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358136973	MGP_WTSI_3_60275883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60379382 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	869 bp upstream
Rr397689	regulatory region 397689	187 bp upstream
Rr577397	regulatory region 577397	628 bp proximal
Rr577398	regulatory region 577398	1129 bp proximal
Rr577399	regulatory region 577399	1638 bp proximal
Tssr29248	transcription start site region 29248	237 bp upstream
Tssr29249	transcription start site region 29249	259 bp upstream
Tssr29250	transcription start site region 29250	633 bp upstream
Tssr29251	transcription start site region 29251	670 bp upstream
Tssr29252	transcription start site region 29252	719 bp upstream
Tssr29253	transcription start site region 29253	770 bp upstream
Tssr29254	transcription start site region 29254	822 bp upstream
Tssr29255	transcription start site region 29255	831 bp upstream
Tssr29256	transcription start site region 29256	846 bp upstream
Tssr29257	transcription start site region 29257	861 bp upstream
Tssr29258	transcription start site region 29258	1101 bp upstream
Tssr29259	transcription start site region 29259	1137 bp upstream