rs261267624 SNP Detail

Summary

• ID
  rs261267624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGACTTGT TGAAATAAGT
  GTATCATTGT AGGCTTGGGC TTTAAGTCCT GTATCCTGGC TACCTGGAAG TCAGTCTTCC
  ACTAACAGCC TTCAGGTGAA AATGTAGAAC TCTCAGCTCC TCCTGCACGA TGCCTGCCTG
  GATGCTGCCA TGCTCCAGCC TTGATGATAA TGGACTGAAC CTATGAACCT ATAAACCAGC
  Y
  CCAATTAAAT GTTTTCAGCA TAAGAGTTGC CTTTGTCGGG CTGGCGAGAT GGCTCAGCAG
  TTAAGAGCAC CGACTGCTCT TCCGAAGGTC CTGAGTTCAA ATCCCAGCAA CCACATGGTG
  GCTCACAACC ATCCGTAATG AGATCTGATG CCCTCTTCTG GTGTGTATGA AGACAGCTAC
  AGTTTACTTA CATATAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336794	CHEV_4_132400518	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261267624					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	1138 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1434 bp upstream
Rr367719	regulatory region 367719	1331 bp downstream
Rr367720	regulatory region 367720	1144 bp downstream
Rr601096	regulatory region 601096	1491 bp distal
Rr601097	regulatory region 601097	1479 bp distal
Rr601098	regulatory region 601098	944 bp distal
Rr601099	regulatory region 601099	1142 bp distal
Tssr43718	transcription start site region 43718	1658 bp upstream
Tssr43719	transcription start site region 43719	1419 bp upstream