rs261260006 SNP Detail

Summary

• ID
  rs261260006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCAGCT GAGCTTTCCC
  TGAGTCTTTT GTCCACAGAT GTTTTCCTCT GGCTCCCTGA GCCAGCTAGA GCCTGTCTCA
  AGCCAACTGT CAGTCTTTCA AGAAGCCCCA CCCACTGGGC TCATTCAAGG CAGGGCTGAA
  AATGTCACAC CTTTCCCTGG GAGCCTAGCC CCATTGCCAG GAAAGGTGAG CTCAGAAGAA
  K
  ACTTCTGAGG CAGAGTGAGT GTCGGAGAAG GCGGGGACTT TCCCCTTACT TCCCCAGTTC
  CCTGGGCCCA CCCCCAGAAC TGGTTTCTAA AGGGGTACCT TAAATGCCAG TTCGTCGGGC
  TGGGCATAAG CCAGGCCCGG CAGCTCATTT CCATGGGAGG AGGGCAGTTT CTCTTCACCA
  GTCTGCCAGT CCTTCCTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362928784	MGP_WTSI_4_114761397	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261260006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362928784	MGP_WTSI_4_114761397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pdzk1ip1	PDZK1 interacting protein 1			Intron
				mRNA-UTR
Rr597713	regulatory region 597713			1473 bp distal
Rr597714	regulatory region 597714			59 bp distal
Tssr38446	transcription start site region 38446			23 bp downstream
Tssr38447	transcription start site region 38447			2 bp downstream
Tssr38448	transcription start site region 38448			71 bp upstream
Tssr38449	transcription start site region 38449			113 bp upstream
Tssr38450	transcription start site region 38450			122 bp upstream
Tssr38451	transcription start site region 38451			198 bp upstream
Tssr38452	transcription start site region 38452			363 bp upstream
Tssr38453	transcription start site region 38453			1368 bp upstream
Tssr38454	transcription start site region 38454			1376 bp upstream
Tssr38455	transcription start site region 38455			1396 bp upstream