rs261255809 SNP Detail

Summary

• ID
  rs261255809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67422523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGGAC CTTTTTTCTT
  AGGTTCTCAA ACACGCTAAG TATTTCTGGC CTCAGAAATA CCGGAAAGGC AGAGGCAGCG
  TTGGAGGGCT CCGCGCCTCT CGCGCGACAC AAGCTCAGGC TGGGAACGCT GCGGTCCCCG
  AGCGTGTCCC GCCGCGTCGC GGCTCACTCA CCCACGCGCG GCCCTCCTGC ACGGTGGCCA
  R
  CACCCGTAGC GCGCTGGGCG AGCCCGCGCG GAAGTTGAAG AAGTGCAGCG CAGCGCGCGC
  CGCCAGCTGC AGGATCCCGC GTGGCAGCCC CACGGCCGCG GGCTGCCGGG GGACTTCGGT
  GTATTCCAGG TCCGCGGGCT CAGTGACAGC AGCGGCCAGT GCGAGGCTCG GCAGCAGCCA
  GAGGCTCAGC AACAGCGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358277093	MGP_WTSI_3_67319112	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261255809					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358277093	MGP_WTSI_3_67319112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67422523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	within coordinates
Gm40067	predicted gene, 40067	59 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Coding-Synonymous
Rr577934	regulatory region 577934	1941 bp distal
Rr577936	regulatory region 577936	323 bp proximal
Rr577937	regulatory region 577937	362 bp proximal
Rr577938	regulatory region 577938	460 bp proximal
Tssr33502	transcription start site region 33502	278 bp downstream
Tssr33503	transcription start site region 33503	297 bp downstream
Tssr33504	transcription start site region 33504	436 bp downstream
Tssr33505	transcription start site region 33505	473 bp downstream
Tssr33506	transcription start site region 33506	514 bp downstream